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Class: Expression (Expression)

A structure for labels representing systematic expressions that describe an entity, as generated by formal nomenclatures (e.g. HGVS for genetic variants, ISCN for karyotypes, HLA nomenclature for HLA genes/alleles).

Comments

  • Similar to the 'Coding' data type, which provides the same fields but for coded values, as opposed to human-readable names.

URI: sepio_linkml:Expression

classDiagram class Expression click Expression href "../Expression" Utility <|-- Expression click Utility href "../Utility" Expression : systemURL Expression : systemVersion Expression : value

Inheritance

Slots

Direct slots

value --> String [1]

A free-text rendering of the expression used as a label for the entity

systemURL --> Uriorcurie [0..1]

A URL for the nomenclature system

systemVersion --> String [0..1]

The version of the nomenclature system.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sepio-framework/sepio-linkml

Mappings

Mapping Type Mapped Value
self sepio_linkml:Expression
native sepio_linkml:Expression

LinkML Source

Direct

name: Expression
description: A structure for labels representing systematic expressions that describe
  an entity, as generated by formal nomenclatures (e.g. HGVS for genetic variants,
  ISCN for karyotypes, HLA nomenclature for HLA genes/alleles).
title: Expression
comments:
- Similar to the 'Coding' data type, which provides the same fields but for coded
  values, as opposed to human-readable names.
from_schema: https://w3id.org/sepio-framework/sepio-linkml
is_a: Utility
attributes:
  value:
    name: value
    description: A free-text rendering of the expression used as a label for the entity
    from_schema: https://w3id.org/sepio-model
    domain_of:
    - DataItem
    - Qualifier
    - Expression
    - Extension
    range: string
    required: true
    multivalued: false
  systemURL:
    name: systemURL
    description: A URL for the nomenclature system
    from_schema: https://w3id.org/sepio-model
    rank: 1000
    domain_of:
    - Expression
    range: uriorcurie
    required: false
    multivalued: false
  systemVersion:
    name: systemVersion
    description: The version of the nomenclature system.
    from_schema: https://w3id.org/sepio-model
    domain_of:
    - Coding
    - Expression
    range: string
    required: false
    multivalued: false

Induced

name: Expression
description: A structure for labels representing systematic expressions that describe
  an entity, as generated by formal nomenclatures (e.g. HGVS for genetic variants,
  ISCN for karyotypes, HLA nomenclature for HLA genes/alleles).
title: Expression
comments:
- Similar to the 'Coding' data type, which provides the same fields but for coded
  values, as opposed to human-readable names.
from_schema: https://w3id.org/sepio-framework/sepio-linkml
is_a: Utility
attributes:
  value:
    name: value
    description: A free-text rendering of the expression used as a label for the entity
    from_schema: https://w3id.org/sepio-model
    alias: value
    owner: Expression
    domain_of:
    - DataItem
    - Qualifier
    - Expression
    - Extension
    range: string
    required: true
    multivalued: false
  systemURL:
    name: systemURL
    description: A URL for the nomenclature system
    from_schema: https://w3id.org/sepio-model
    rank: 1000
    alias: systemURL
    owner: Expression
    domain_of:
    - Expression
    range: uriorcurie
    required: false
    multivalued: false
  systemVersion:
    name: systemVersion
    description: The version of the nomenclature system.
    from_schema: https://w3id.org/sepio-model
    alias: systemVersion
    owner: Expression
    domain_of:
    - Coding
    - Expression
    range: string
    required: false
    multivalued: false